predictState: Predict state based on scored gene lists.

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Predict state based on scored gene lists.

Description

Predict cell cycle phase based on scores from the metadata table and add column with the results to it. Call the addInfo function to add the information to assay@sampTab.

Usage

predictState(object, assay.type = "RNA", columns, col.name)

Arguments

object	CellRouter object.
assay.type	character; the type of data to use.
columns	character vector; columns to be selected from the metadata table.
col.name	character; column name to be added to the metadata table after state prediction.

Value

CellRouter object with the sampTab slot updated.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.