processCurves-methods: Process curves

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Process curves

Description

Process curves found in findCurves.

Usage

processCurves(
  object,
  assay.type = "RNA",
  genes,
  num.cells,
  neighs,
  column.ann = "population",
  column.color = "colors"
)

## S4 method for signature 'CellRouter'
processCurves(
  object,
  assay.type = "RNA",
  genes,
  num.cells,
  neighs,
  column.ann = "population",
  column.color = "colors"
)

Arguments

object	CellRouter object.
assay.type	character; the type of data to use.
genes	character vector; gene names that are used for trajectory analysis.
num.cells	numeric; minimum of cells contained in the trajectories.
neighs	numeric; the size of the neighborhood in kNN graph used to smoothen kinetic profiles.
column.ann	character; transitions between the cell states provided here are identified, such as clusters or sorted populations.
column.color	character; the colors corresponding to the annotation in column.ann.

Value

CellRouter object with the curves and the pathsinfo slots updated.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.