regulatornetwork: Plot subnetworks for selected transcriptional regulators in...

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Plot subnetworks for selected transcriptional regulators in the trajectories.

Description

In development, currently not working. Plot a network module enriched around transcriptional regulators of cell-fate transitions.

Usage

regulatornetwork(object, x, ggrn, genelist)

Arguments

object	CellRouter object.
x	list; GRN scores as calculated by the grnscores function.
ggrn	igraph; the gene regulatory network.
genelist	character vector; gene names containing the transcriptional regulators from which the network modules will be identified.

Value

list; rgrn graphs for all names in x, and plot.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.