scaleData-methods: Scale data

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Scale data

Description

Scale and center the data. Individually regress variables provided in vars.regress using using a linear model. Other models are under development.

Usage

scaleData(
  object,
  assay.type = "RNA",
  genes.use = NULL,
  scale.max = 10,
  vars.regress = NULL,
  blocksize = 500
)

## S4 method for signature 'CellRouter'
scaleData(
  object,
  assay.type = "RNA",
  genes.use = NULL,
  scale.max = 10,
  vars.regress = NULL,
  blocksize = 500
)

Arguments

object	CellRouter object.
assay.type	character; the type of data to use.
genes.use	vector; genes to scale/center. Default is all genes in normalized data.
scale.max	numeric; max value in scaled data.
vars.regress	character vector; variables to regress out.
blocksize	numeric; size of the blocks in which genes will be scaled.

Value

CellRouter object with the scale.data slot updated.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.