scoreGeneSets: Score gene sets.

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Score gene sets.

Description

Description.

Usage

scoreGeneSets(
  object,
  assay.type = "RNA",
  sample.name = "Sample1",
  genes.list,
  bins = 25,
  genes.combine = NULL
)

Arguments

object	CellRouter object.
assay.type	character; the type of data to use.
sample.name	character; the name of the tissue sample.
genes.list	list; gene lists for which the scores will be calculated.
bins	numeric; number of bins to split expression data.
genes.combine	character; genes to combine. The default is all genes in normalized data.

Value

CellRouter object with the sampTab slot updated.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.