signaling2TF: Signaling to transcription factors.

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Signaling to transcription factors.

Description

Select the paths in the specified interaction and plot the activity score. Save the plot to file and return the data frame used to generate it.

Usage

signaling2TF(npaths, interaction, num.pathways = 10)

Arguments

npaths	list; the ranked pathways and the number of number of targets in each interaction as calculated by the rankpaths function.
interaction	character; the name of the selected interaction.
num.pathways	numeric; the number of pathways considered in the signaling.

Value

list; a path and interaction data frame, and the plot.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.