sourcestargets: Create source target list for each interaction.

In edroaldo/fusca: Framework for Unified Single-Cell Analysis

Create source target list for each interaction.

Description

For each interaction above the threshold, create a list of receptors, containing cell surface receptor as sources and the transcriptional regulators as targets; a list of ligands, sources as ligands and targets as transcriptional regulators; and a data frame of ligands, receptors, and interaction value.

Usage

sourcestargets(matrix, threshold, tfs)

Arguments

matrix	data frame; the interaction matrix as calculated by the interactionmatrix function.
threshold	numeric; select the interactions which values are above the threshold.
tfs	character vector; the transcription factors.

Value

list; the receptor, the ligand, and interaction data frame for each interaction.

edroaldo/fusca documentation built on March 1, 2023, 1:43 p.m.