Man pages for elimereu/matchSCore2
What the Package Does TODOELI
| align_run | Integration of different datasets |
| compute_labels | Clustering matching |
| cor_batch | This function computes the correlation between cells of the... |
| cut_markers | Select the top n cluster markers |
| defac_matrix | Markers and differentially expressed genes of the simulated... |
| gene_cl | gene_cl |
| gene_cl.chromium | gene_cl.chromium |
| gene_cl.obs | gene_cl.obs |
| gene_cl.ref | gene_cl.ref |
| GOannotation | Compute the weighted GO enrichment of cluster-specific... |
| identity_heatmap | Heatmaps of class probabilities |
| identity_map | Cell projections onto the reference dataset |
| markers | markers |
| markers_by_specificity | Simulated group markers |
| matchSCore | Compute the cellular phenotype matching across simulated cell... |
| matchSCore2 | Compute the cellular phenotype matching across reference cell... |
| matchSCore2-pkg | matchSCore2 |
| rank_sim | Rank simulated group markers |
| scores | Compute matchSCore for different thresholds of specificity... |
| seurat3_run | This function runs Seurat3 by using the output of the... |
| summary_barplot | Cumulative barplot of cell mapped compositions |
| tool_scores_by_specificity | Compute matchSCore for a specified value of specificity and... |
| train_model | Model training |
| tscores_plots | Plots matchSCore trends for a specific tool |
