defac_matrix: Markers and differentially expressed genes of the simulated...

In elimereu/matchSCore2: What the Package Does TODOELI

Description

This function gives you information about differentially expressed genes, markers and and markers specific of only one group. The definition is based according to the DEFac value provided by the Splatter simulation.

Usage

defac_matrix(sim)

Arguments

sim	A Splatter sim object with simulated cellular groups or paths.

Details

Here a gene is defined marker of a group if its DEFac>1 in that group.

Value

A list with four outputs:

• a data frame (de) indicating differentially expressed (DE) genes (1) and not (0). Columns represent groups and rows are genes.

• The list with sets of de genes per group (gr_de).

• The list with sets of group markers (markers).

• The list with sets of markers specific only in one group (sp_markers).

Examples

# TODO

elimereu/matchSCore2 documentation built on April 9, 2020, 5:41 p.m.