seurat3_run: This function runs Seurat3 by using the output of the...

In elimereu/matchSCore2: What the Package Does TODOELI

Description

This function runs Seurat3 by using the output of the align_run function.

Usage

seurat3_run(
  out_align,
  dims = c(1:10),
  res = 0.2,
  col_anno = NULL,
  col_data = NULL,
  verbose = TRUE
)

Arguments

out_align	The output of the function align_run. The combined count matrix is used to create the Seurat object and the integrated is provided to the slot @data.
dims	Seurat parameter. It is the dimension of the PCA space.
res	Seurat resolution parameter.
col_anno	TODO
col_data	TODO
verbose	Logical, controls the displaying of additional messages while running the function. Defaults to TRUE.

Value

The integrated Seurat object. Two UMAP plots with cells coloured by annotation and dataset will be generated.

Examples

# TODO

elimereu/matchSCore2 documentation built on April 9, 2020, 5:41 p.m.