align_run: Integration of different datasets

In elimereu/matchSCore2: What the Package Does TODOELI

Description

Integration of different datasets

Usage

align_run(dataset_list, marker_list, ref, verbose = TRUE)

Arguments

dataset_list	A named list of annotated SingleCellExperiments objects. The cell annotations are in the cluster slots.
marker_list	A list of cluster specific markers from the input dataset.
ref	The name of the reference dataset from the dataset_list. It has to be the first in the dataset_list.
verbose	Logical, controls the displaying of additional messages while running the function. Defaults to TRUE.

Value

A list containing:

• sce: the integrated SingleCellExperiment object.

• integrated: the integrated scaled matrix.

• counts: the combined count matrix.

• annotation_label: the cell annotations.

• dataset_label: a vector indicating the dataset of origin for each cell.

• genes: the set of common genes used.

Examples

# TODO

elimereu/matchSCore2 documentation built on April 9, 2020, 5:41 p.m.