scores: Compute matchSCore for different thresholds of specificity...

In elimereu/matchSCore2: What the Package Does TODOELI

Description

This function computes the matchSCore for different cutoffs of marker specificity and top cluster markers

Usage

scores(sim, tool_out, ntop, tool_run = seurat3_run, labels)

Arguments

sim	A Splatter simulation object.
tool_out	The output of the used tool to cluster your data (It should be as the output of the seurat3_run function).
ntop	A vector with different proportions of top-ranked markers for each cluster. Usually seq(250,2000,250).
tool_run	The name of the function used to run the clusters without quote (Defaults to seurat3_run).
labels	Cluster labels as in the output of the compute_labels() function.

Value

A matrix. Each row contains the matchSCore at the specified level of specificity and ntop.

Examples

# TODO

elimereu/matchSCore2 documentation built on April 9, 2020, 5:41 p.m.