tool_scores_by_specificity: Compute matchSCore for a specified value of specificity and...

In elimereu/matchSCore2: What the Package Does TODOELI

Description

This function computes the matchSCore for different cutoffs of marker specificity and top cluster markers

Usage

tool_scores_by_specificity(
  sim,
  specificity,
  tool_out,
  ntop,
  tool_run = seurat3_run,
  labels
)

Arguments

sim	A Splatter simulation object.
specificity	The proportion of top-ranked markers for each simulated group.
tool_out	The output of the used tool to cluster your data. It should be as the output of the seurat3_run function.
ntop	The proportion of top-ranked markers for each cluster.
tool_run	The name of the function used to run the clusters without quote. Default=seurat3_run).
labels	Cluster labels as in the output of the compute_labels() function.

Value

A matchSCore value

Examples

# TODO

elimereu/matchSCore2 documentation built on April 9, 2020, 5:41 p.m.