matchSCore2: Compute the cellular phenotype matching across reference cell...

In elimereu/matchSCore2: What the Package Does TODOELI

Description

This function computes the matchSCore across reference gene markers and cluster-specific genes computationally obtained from the tool.

Usage

matchSCore2(gene_cl.ref, gene_cl.obs, xlab, ylab)

Arguments

gene_cl.ref	A list of reference group markers. Each element of the list represents the set of markers for each biological group.
gene_cl.obs	A list of cluster-specific gene sets to match with gene_cl.ref.
xlab	A character label, indicating the tested technology to plot in the matchSCore table (e.g. "Chromium") on the x axis
ylab	A character label, indicating the reference technology to plot in the matchSCore table(e.g. "Smart-Seq2") on the y axis

Value

A list with the matchSCore matrix and the ggplot table at the ggplot slot.

Examples

# TODO

elimereu/matchSCore2 documentation built on April 9, 2020, 5:41 p.m.