API for elmerfer/RAPInetMHCpan
an R API to netMHCpan and netMHCIIpan softwares for neural network prediction of peptide binders
| Global functions | |
|---|---|
| .CheckAllele | Source code |
| .ConfigFile | Source code |
| .EditTCSHfile | Source code Source code |
| .EditTCSHfile.v4.1 | Source code |
| .GetMHCgeneList | Man page Source code |
| .GetPath | Source code |
| .OpenConfigFile | Man page Source code |
| .RunNetMHCIIPan | Source code |
| .RunNetMHCPan | Source code Source code |
| .SaveConfigFile | Man page Source code |
| .SoftwareInfo | Source code |
| .TestCode | Source code Source code |
| .onLoad | Source code |
| BuildPeptideFile | Source code |
| CheckFastQC | Man page Source code |
| CheckTrimGalore | Man page Source code |
| Format.Out | Source code |
| FormatOut | Man page Source code |
| GetAlleleList | Man page Source code |
| ImmunoDominantRegions | Man page Source code |
| InstallFastQC | Man page Source code |
| InstallTrimGalore | Man page Source code |
| PeptideBindersLogo | Man page Source code |
| PeptideCoreLogo | Man page Source code |
| PlotBindingPeptideDistribution | Man page Source code |
| PlotPeptideCore | Man page Source code |
| PlotPeptideLengthDistribution | Man page Source code |
| RepresentedRegions | Man page Source code |
| RsubBuildIndex | Man page Source code |
| RsubFeatureCounts | Source code |
| RsubSubjunc | Source code |
| RunAllMHC | Man page Source code |
| RunAllMHCII | Man page Source code |
| RunFastQC | Man page Source code |
| RunMHCAlleles | Man page Source code |
| RunMHCIIAlleles | Man page Source code |
| RunNetMHCIIPan | Man page Source code |
| RunNetMHCPan | Man page Source code |
| RunTrimGalore | Man page Source code |
| SaveExcel | Man page Source code |
| VerifySeq | Man page Source code |
| installNetMHCIIPan | Man page Source code |
| installNetMHCPan | Man page Source code |
| installNetMHCPan4.1 | Source code |
| summary.RAPIMHCII | Man page Source code |
