installNetMHCPan: Painless installation tool for netMHCpan in linux and R

In elmerfer/RAPInetMHCpan: an R API to netMHCpan and netMHCIIpan softwares for neural network prediction of peptide binders

Description

Painless installation tool for netMHCpan in linux and R

Usage

installNetMHCPan(file = NULL, data = NULL, dir)

Arguments

file	NULL (default) or character with the netMHCpanXX.Linux.tar.gz file. If NULL, a file selection dialog window will be opened.
data	NULL(default) or character with the path of the data.Linux.tar.gz data file. If NULL it will be automatically downloaded from the netMHCpan server (it may take time)
dir	character directory of dir the software will be installed

Details

install the netMHCpan software in your computer and allows suing it though R. as a results it will create an RDS file named which is used to run the rest of the function configIniRAPInetMHCpan.RDS PLEASE DO NOT DELET IT

In this way, it may be run in parallel to speed up peptides searching though the whole HLA set. Is successful installation , an output displaying the following information should be seen on screen.

Value

if instalation succeed, the following message is printed "netMHCpan Instaltion OK

elmerfer/RAPInetMHCpan documentation built on Sept. 17, 2021, 2:14 p.m.