installNetMHCIIPan: Painless instalation tool for netMHCIIpan in linux and R

In elmerfer/RAPInetMHCpan: an R API to netMHCpan and netMHCIIpan softwares for neural network prediction of peptide binders

Description

Painless instalation tool for netMHCIIpan in linux and R

Usage

installNetMHCIIPan(file = NULL, data = NULL, dir)

Arguments

file	NULL (default) or character with the netMHCIIpanXX.Linux.tar.gz file. If NULL, a file selection dialog window will be opened.
data	NULL(default) or character with the path of the data.Linux.tar.gz data file. If NULL it will be automatically downloaded from the netMHCIIpan server (it may take time)
dir	character. dir the woftware will be installed

Details

install the netMHCIIpan software in your computer and allows suing it trhough R as a results it will cread an RDS file named which is used to run the rest of the function configIniRAPInetMHCIIpan.RDS PLEASE DO NOT DELET IT

In this way, it may be run in parallel to speed up peptides sercehing trhopugh the whole HLA set. Is succesfull instalation , an output displaying the following information shoule be seen on screen. .....

Value

None.

Examples

## see...

elmerfer/RAPInetMHCpan documentation built on Sept. 17, 2021, 2:14 p.m.