GetAlleleList: GetMHCgeneList

In elmerfer/RAPInetMHCpan: an R API to netMHCpan and netMHCIIpan softwares for neural network prediction of peptide binders

Description

returns an list of Allele types (length nSegments)

Usage

GetAlleleList(
  nSegments = 10,
  MHC.group = c("HLA", "BoLA", "Gogo", "H", "H2", "Mamu", "Patr", "SLA", "DRB", "DQ",
    "DP", "Mouse", "All"),
  MHCII = FALSE
)

Arguments

nSegments	integer, number of segments
MHC.group	MHC allele group "HLA","BoLA", "Gogo","H","H2", "Mamu", "Patr","SLA", "DRB", "DQ","DP","Mouse","All"
MHCII	(logical) if MHCII = TRUE, then only MHC.group in "DRB", "DQ","DP","Mouse","All" are evaluated if MHCII = FALSE, only "HLA","BoLA", "Gogo","H","H2", "Mamu", "Patr","SLA", "All" are evaluated

Value

a list of alleles with length = nSegments (ussualy set to the number of cores or CPU workers)

Examples

## Not run: 
FormatOut(eDB = result)

## End(Not run)

elmerfer/RAPInetMHCpan documentation built on Sept. 17, 2021, 2:14 p.m.