PeptideCoreLogo: PeptideBindersLogo
In elmerfer/RAPInetMHCpan: an R API to netMHCpan and netMHCIIpan softwares for neural network prediction of peptide binders
Description
Usage
Arguments
Value
Examples
View source: R/PlotRAPIFunctions.R
Description
generate a ggplot2 logo of all cores binders associated to such peptide.
The cores is the sequence predicted as binder inside the peptide, it can be the same sequence or
a shorter one (a deletion/loop in the tested sequence) or longer one with an insertion.
Usage
1
PeptideCoreLogo(eDB, peptide)
Arguments
eDB
a data frame or RAPIMHCI or RAPIMHCII class object
peptide
a string sequence peptide
Value
a ggplot2 object
Examples
1
2
3
4
## Not run:
PeptideBindersLogo(eDB = res, peptide == "MSRIGMEVTPSGTW")
## End(Not run)
elmerfer/RAPInetMHCpan documentation built on Sept. 17, 2021, 2:14 p.m.
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Description Usage Arguments Value Examples
View source: R/PlotRAPIFunctions.R
Description
generate a ggplot2 logo of all cores binders associated to such peptide. The cores is the sequence predicted as binder inside the peptide, it can be the same sequence or a shorter one (a deletion/loop in the tested sequence) or longer one with an insertion.
Usage
1 | PeptideCoreLogo(eDB, peptide)
|
Arguments
eDB |
a data frame or RAPIMHCI or RAPIMHCII class object |
peptide |
a string sequence peptide |
Value
a ggplot2 object
Examples
1 2 3 4 | ## Not run:
PeptideBindersLogo(eDB = res, peptide == "MSRIGMEVTPSGTW")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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