RepresentedRegions: PlotPeptideLengthDistribution

In elmerfer/RAPInetMHCpan: an R API to netMHCpan and netMHCIIpan softwares for neural network prediction of peptide binders

Description

generate a ggplot2, where in the y axis the amount of alleles bindig to the sequence starting at x position is displayed they are also known as "immunodominant regions" as in Grifoni et al. https://doi.org/10.1016/j.chom.2020.03.002

Usage

RepresentedRegions(
  resDF,
  byGroup = FALSE,
  main = "Number of candidate epitopes per position",
  nbk = 100
)

Arguments

resDF	a data frame or RAPIMHCI or RAPIMHCII class object
main	a cg¿haracter with a plot title
nbk	number of x axis breaks

Value

a ggplot2 object

Examples

## Not run: 
RepresentedRegions(resDF)

## End(Not run)

elmerfer/RAPInetMHCpan documentation built on Sept. 17, 2021, 2:14 p.m.