Man pages for elmerfer/RAPInetMHCpan
an R API to netMHCpan and netMHCIIpan softwares for neural network prediction of peptide binders
| CheckFastQC | verify if FASTQC is accessible by the library path location... |
| CheckTrimGalore | verify if TrimGalores is accessible by the library path... |
| dot-GetMHCgeneList | .GetMHCgeneList |
| dot-OpenConfigFile | internal function to load configuration info. |
| dot-SaveConfigFile | internal function to save configuration info. |
| FormatOut | FormatOut |
| GetAlleleList | GetMHCgeneList |
| ImmunoDominantRegions | ImmunoDominantRegions |
| InstallFastQC | painless FastQC installation. please provide the url from... |
| installNetMHCIIPan | Painless instalation tool for netMHCIIpan in linux and R |
| installNetMHCPan | Painless installation tool for netMHCpan in linux and R |
| InstallTrimGalore | painless trim_galore installation. please provide the url... |
| PeptideBindersLogo | PeptideBindersLogo |
| PeptideCoreLogo | PeptideBindersLogo |
| PlotBindingPeptideDistribution | PlotBindingPeptideDistribution |
| PlotPeptideCore | PlotPeptideCore |
| PlotPeptideLengthDistribution | PlotPeptideLengthDistribution |
| RepresentedRegions | PlotPeptideLengthDistribution |
| RsubBuildIndex | RsubBuildIndex |
| RunAllMHC | RunAllMHC |
| RunAllMHCII | RunMHCIIAlleles |
| RunFastQC | R interface to FastQC. It requires that FastQC be installed... |
| RunMHCAlleles | RunMHCAlleles |
| RunMHCIIAlleles | RunMHCIIAlleles |
| RunNetMHCIIPan | RunNetMHCIIPan |
| RunNetMHCPan | RunNetMHCPan |
| RunTrimGalore | R interface to TrimGalore please see TrimGalore web site at... |
| SaveExcel | SaveExcel |
| summary.RAPIMHCII | summary |
| VerifySeq | VerifySeq |
