#require("roxygen2") ## MUSTAFA: do we really required roxygen2 and devtools to run the scripts ? They are required for building the package, but maybe not for running the analyses
#require("devtools") ## MUSTAFA: do we really required roxygen2 and devtools to run the scripts ? They are required for building the package, but maybe not for running the analyses
# loading required libraries
requiredCRAN <- c(
'BiocManager', # required to check consistency between dependencies
'roxygen2',
'dplyr', # Required for caret (depedency of dependency)
'RCurl', # Undeclared dependency of recount
'XML', # Undeclared dependency of recount
'Rcpp', # Wrongly declared dependency for xml2, itself required for roxygen2
'roxygen2',
'yaml', # Required for the config file
'devtools',
'caret',
'class',
"broom",
"roxygen2",
"scatterplot3d",
"e1071",
"randomForest",
"foreach",
"doParallel",
"pheatmap", # Heatmaps with extended control on dimensions
"doMC")
# RequiredCRANPackages(requiredCRAN)
message("Required CRAN libraries:\n\t", paste(collapse="\n\t", requiredCRAN))
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