background_pathway_sets | R Documentation |
This function reads the pathway sets for the filtered gene IDs and performs pathway analysis for the query with the filtered background.
background_pathway_sets(
processed_data,
gene_info,
sub_query,
go,
pathway_table,
idep_data,
select_org
)
processed_data |
Matrix of gene data that has been through
|
gene_info |
Dataframe of converted IDs information from the function
|
sub_query |
Vector of IDs that the enrichment
analysis should be performed on. This list is also returned from
|
go |
String designating the section of the database to query for pathway
analysis. See |
pathway_table |
Data frame of results from
|
idep_data |
List of data returned from |
select_org |
Species selected. |
Pathway gene set table for the background genes. Used in find_overlap to calculate pvals for the filtered background
This function is used internally in find_overlap()
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