convert_data: Convert expression data rownames to ensembl

In espors/idepGolem: Integrated Differential Expression and Pathway Analysis

Convert expression data rownames to ensembl

Description

This function works with the converted ids to take in the expression data and swap the rownames to the converted ids. It returns the data exactly the same except for the changed ids.

Usage

convert_data(
  converted,
  data,
  no_id_conversion,
  multiple_map = c("mean", "median", "sum", "max", "max_sd")
)

Arguments

converted	Data from convert_id() function containing converted ids
data	Data from the input expression file
no_id_conversion	TRUE/FALSE for converting data ids or not
multiple_map	String to designate how to handle values when multiple ids are matched to the same gene. Options are 'mean', 'median', 'sum', 'max', and 'max_id'.

Value

Returns original data with rownames converted to ensembl

See Also

Other load data functions: gene_info(), get_all_gene_names(), input_data()

espors/idepGolem documentation built on April 23, 2024, 1:11 p.m.