enrich_barplot: Generate barplot for enrichment results

In espors/idepGolem: Integrated Differential Expression and Pathway Analysis

Generate barplot for enrichment results

Description

Used to translate enrichment analysis results into bar plot like those in ShinyGO

Usage

enrich_barplot(
  enrichment_dataframe,
  pathway_order,
  order_x,
  plot_size,
  plot_color,
  plot_font_size,
  plot_marker_size,
  plot_high_color,
  plot_low_color,
  chart_type,
  aspect_ratio,
  select_cluster
)

Arguments

enrichment_dataframe	A data frame of pathways, P values ect.
pathway_order	Sort pathway list
order_x	x-axis order
plot_size	size mapping vairalbe
plot_color	color mapping vairable
plot_font_size	font size
plot_marker_size	marker size
plot_high_color	High color
plot_low_color	low color
chart_type	barplot, lollipop, or dotplot
aspect_ratio	aspect ratio of plot
select_cluster	which cluster is selected
threshold_wald_test	whether to use threshold-based Wald test

Value

A ggplot2 object

espors/idepGolem documentation built on Oct. 27, 2024, 4:56 a.m.