enrichment_tree_plot: Dendogram of enriched pathways

In espors/idepGolem: Integrated Differential Expression and Pathway Analysis

Dendogram of enriched pathways

Description

Create a dendogram plot of the enriched pathways to illustrate which paths contain similar genes.

Usage

enrichment_tree_plot(
  go_table,
  group,
  right_margin = 10,
  leaf_color_choices = NULL
)

Arguments

go_table	Enrichment table from the pathway analysis, the last column Genes contains lists
group	Selected group int the Direction column
right_margin	Control the size of the dendogram labels
leaf_color_choices	Vector of 2 colors for down and up regulation

Value

A dendogram plot that shows the users what pathways are that are enriched share genes.

espors/idepGolem documentation built on April 23, 2024, 1:11 p.m.