deg_heat_data: Find data for the heatmap

In espors/idepGolem: Integrated Differential Expression and Pathway Analysis

Find data for the heatmap

Description

Filter the processed data into a submatrix that only contains the genes that had a significant fold change. The samples will also be subsetted to only contain samples that pertain to the selected comparison or contrast.

Usage

deg_heat_data(limma, select_contrast, processed_data, contrast_samples)

Arguments

limma	Return results list from the limma_value function
select_contrast	Comparison from DEG analysis to filter for the significant genes
processed_data	Data that has been through the pre-processing
contrast_samples	Columns that are in the group of the selected comparison

Value

Submatrix of the processed data with only the significantly expressed genes and the columns that are in the selected contrast group.

espors/idepGolem documentation built on Oct. 27, 2024, 4:56 a.m.