R/upMSA.R

In etheleon/mapBlat: What the package does (one line)

#' MSA of contigs against the MSA of reference sequences
#'
#' 1600 contigs aligned against all references sequences in
#' ko:K00001, alcohol dehydrogenase
#' The best match chosen then reMSA according to MSA of
#' reference sequences.
#'
#' @format A DNAStringSet instance of length 1600 
#' \describe{
#'     \item{Dependencies}{Requires the Biostrings package from Bioconductor}
#'     \item{Names}{Names of the contigs which the sequences are aligned to}
#' }
#'
"upMSA"