# identifications that are considered contaminants and may be filtered by default
host_contaminants = c('Homo sapiens', 'Mus musculus', 'Chordata')
seq_contaminants = c(
'artificial sequences',
'Enterobacteria phage phiX174 sensu lato'
)
microbe_contaminants = c(
'Enterobacteriales',
'Cutibacterium acnes',
'Escherichia coli',
'Saccharomyces cerevisiae',
'Ralstonia pickettii'
)
commoncontaminants <- c() ## this vector is initially filtered
allcontaminants <-
list(Host = host_contaminants,
Artificial = seq_contaminants,
Microbes = microbe_contaminants,
Other = c('unclassified'))
#allcontaminants <- unlist(allcontaminants)
#names(allcontaminants) <- NULL
#allcontaminants <- sort(allcontaminants)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.