tpm: tpm

In fossbert/binilib: Carlo's little helper

Description

This function computes tpm for human exonic read counts

Usage

tpm(
  counts,
  log = TRUE,
  offset = 0.25,
  type = c("Symbol", "Entrez"),
  species = c("Human", "Mouse"),
  filterZero = TRUE
)

Arguments

counts	Numeric matrix of human raw read counts per gene
log	Logical, whether the data should be log2 transformed
offset	Number to offset zero values when applying log transformation
type	Character to indicate the gene identifier, defaults to gene symbol
species	Character to indicate the genes' species origin, defaults to human

Value

Numeric matrix of TPM data

fossbert/binilib documentation built on April 23, 2021, 10:31 p.m.