Description Usage Arguments Value
View source: R/viper-helpers.R
Extract the top up and down regulated MR per sample
1 2 3 4 5 6 7 8 | vpres2regulon(
vpres,
nn = 25,
direction = c("both", "up", "down"),
make_regulon = FALSE,
reverse = FALSE,
verbose = TRUE
)
|
vpres |
numeric matrix of NES as returned by the viper function |
nn |
integer of number of top MR to consider for each regulon |
direction |
character, which tail should be returned, defaults to both up and down |
make_regulon |
logical, whether to set class of return object to "regulon" |
reverse, |
logical, whether to reverse the top MR - useful for drug screening results and downstream applications |
verbose |
logical, whether to message progress report |
list object with top dysregulated MR per sample
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