Files in frankkramer-lab/RCX
R package implementing the Cytoscape Exchange (CX) format

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/AspectDependencies.R R/Igraph.R R/Json-fromJson.R R/Json-toJson.R R/Print.R R/RCX-CartesianLayout.R R/RCX-Cytoscape-Groups.R R/RCX-Cytoscape-HiddenAttributes.R R/RCX-Cytoscape-NetworkRelations.R R/RCX-Cytoscape-SubNetworks.R R/RCX-Cytoscape-TableColumns.R R/RCX-Cytoscape-VisualProperties.R R/RCX-MetaData.R R/RCX-NodeEdgeNetworkAttributes.R R/RCX-NodesAndEdges.R R/RCX.R R/Summary.R R/Utils-checks.R R/Utils-error-handling.R R/Utils-general.R R/Utils-json.R R/Utils-validation.R R/Validate.R R/Visualize.R R/graphNEL.R
R/sysdata.rda
README.md data-raw/Defaults.R
data-raw/html/index.part1.html
data-raw/html/index.part2.html
data-raw/html/index.part3.html
inst/extdata/Direct-p53-effectors-67c3b75d-6191-11e5-8ac5-06603eb7f303.cx
inst/extdata/Imatinib-Inhibition-of-BCR-ABL-66a902f5-2022-11e9-bb6a-0ac135e8bacf.cx
inst/extdata/RCX_Data_Structure.cx
inst/extdata/WP3633-d1663a2f-56bc-11eb-9e72-0ac135e8bacf.cx
inst/script/Imatinib-Inhibition-of-BCR-ABL-66a902f5-2022-11e9-bb6a-0ac135e8bacf.sh
inst/script/RCX_Data_Structure.sh
inst/script/WP3633-d1663a2f-56bc-11eb-9e72-0ac135e8bacf.sh
man-roxygen-examples/CX_load.R man-roxygen-examples/CX_save.R man-roxygen-examples/RCXconversionNGraph.R man-roxygen-examples/RCXconversionRCXgraph.R man-roxygen-examples/cartesian-layout-create.R man-roxygen-examples/cartesian-layout-update.R man-roxygen-examples/cy-groups-create.R man-roxygen-examples/cy-groups-update.R man-roxygen-examples/cy-hidden-attributes-create.R man-roxygen-examples/cy-hidden-attributes-update.R man-roxygen-examples/cy-network-relations-create.R man-roxygen-examples/cy-network-relations-update.R man-roxygen-examples/cy-subnetworks-create.R man-roxygen-examples/cy-subnetworks-update.R man-roxygen-examples/cy-table-column-create.R man-roxygen-examples/cy-table-column-update.R man-roxygen-examples/cy-visual-properties-create.R man-roxygen-examples/cy-visual-properties-update.R man-roxygen-examples/cy-visual-property-create.R man-roxygen-examples/cy-visual-property-dependencies-create.R man-roxygen-examples/cy-visual-property-get.R man-roxygen-examples/cy-visual-property-mappings-create.R man-roxygen-examples/cy-visual-property-properties-create.R man-roxygen-examples/cy-visual-property-update.R man-roxygen-examples/edgeAttributes-create.R man-roxygen-examples/edgeAttributes-update.R man-roxygen-examples/edges-create.R man-roxygen-examples/edges-update.R man-roxygen-examples/graphNEL.R man-roxygen-examples/igraph.R man-roxygen-examples/meta-data-properties-update.R man-roxygen-examples/meta-data-update.R man-roxygen-examples/networkAttributes-create.R man-roxygen-examples/networkAttributes-update.R man-roxygen-examples/nodeAttributes-create.R man-roxygen-examples/nodeAttributes-update.R man-roxygen-examples/nodes-create.R man-roxygen-examples/nodes-update.R man-roxygen-examples/rcx-create.R man-roxygen-examples/validate.R man-roxygen/RCXconversionRCXgraph.R man-roxygen/RCXgraph.R man-roxygen/RCXgraphConversionRCX.R man-roxygen/cy-visual-properties-description.R man-roxygen/cy-visual-properties-property-adding.R man-roxygen/cy-visual-properties-structure-full.R man-roxygen/cy-visual-properties-structure.R man-roxygen/cy-visual-property-structure.R man-roxygen/nodes.R man/CartesianLayout.Rd man/Convert-Names-and-Classes.Rd man/CyGroups.Rd man/CyHiddenAttributes.Rd man/CyNetworkRelations.Rd man/CySubNetworks.Rd man/CyTableColumn.Rd man/CyVisualProperties.Rd man/CyVisualProperty.Rd man/CyVisualPropertyDependencies.Rd man/CyVisualPropertyMappings.Rd man/CyVisualPropertyProperties.Rd man/EdgeAttributes.Rd man/Edges.Rd man/Igraph.Rd man/Meta-data.Rd man/NetworkAttributes.Rd man/NodeAttributes.Rd man/Nodes.Rd man/RCX-object.Rd man/RCX.Rd man/aspectClasses.Rd man/checks.Rd man/convert-data-types-and-values.Rd man/convert2json.Rd man/countElements.Rd man/custom-print.Rd man/dot-addAspectNameToJson.Rd man/dot-addAttributeData.Rd man/dot-aspectClass.Rd man/dot-convertRawList.Rd man/dot-createAttributeAspect.Rd man/dot-createCyVpPorD.Rd man/dot-errorCodes.Rd man/dot-filterBy.Rd man/dot-format.Rd man/dot-infer.Rd man/dot-json2RDataType.Rd man/dot-jsonL.Rd man/dot-jsonV.Rd man/dot-log.Rd man/dot-mergeAttributesAspect.Rd man/dot-mergeIdAspect.Rd man/dot-modClass.Rd man/dot-pasteC.Rd man/dot-renameDF.Rd man/dot-stop.Rd man/dot-summaryAspect.Rd man/dot-transformListLength-set.Rd man/dot-transformVLD.Rd man/dot-validateAttributesAspect.Rd man/dot-validateCyVisualPropertyPandD.Rd man/dot_test.Rd man/getCyVisualProperty.Rd man/graphNEL.Rd man/hasIds.Rd man/idProperty.Rd man/jsonToRCX.Rd man/markAttributeColumn.Rd man/markRefColumn.Rd man/maxId.Rd man/rcxToJson.Rd man/readCX.Rd man/referredBy.Rd man/refersTo.Rd man/summary.Rd man/toCX.Rd man/updateCartesianLayout.Rd man/updateCyGroups.Rd man/updateCyHiddenAttributes.Rd man/updateCyNetworkRelations.Rd man/updateCySubNetworks.Rd man/updateCyTableColumn.Rd man/updateCyVisualProperties.Rd man/updateCyVisualProperty.Rd man/updateEdgeAttributes.Rd man/updateEdges.Rd man/updateMetaDataProperties.Rd man/updateNetworkAttributes.Rd man/updateNodeAttributes.Rd man/updateNodes.Rd man/validate.Rd man/visualize.Rd man/writeCX.Rd man/writeHTML.Rd tests/testthat.R tests/testthat/test_01_rcx_model.r
vignettes/1_network_cose_with_label.png
vignettes/1_network_no_cvp.png
vignettes/1_network_orig.png
vignettes/Appendix_The_RCX_and_CX_Data_Model.Rmd vignettes/Creating_RCX_from_scratch.Rmd vignettes/Extending_the_RCX_Data_Model.Rmd
vignettes/RCX_Data_Structure.png
vignettes/RCX_Data_Structure_Legend.png
vignettes/RCX_Data_Structure_on_NDEx.png
vignettes/RCX_an_R_package_implementing_the_Cytoscape_Exchange_format.Rmd
vignettes/cytoscape-logo.png
vignettes/ndexedit_logo.png
vignettes/network_cose.png
vignettes/network_description_ndex.png
vignettes/network_with_coordinates.png
frankkramer-lab/RCX documentation built on Jan. 10, 2023, 12:53 p.m.