API for fungenomics/cytobox
A toolbox for analyzing single cell RNA-seq data
| Global functions | |
|---|---|
| Data_obj | Source code |
| Node | Source code |
| Tree | Source code |
| abcam.neuronal.markers | Man page |
| addEmbedding | Man page Source code |
| addLabels | Man page Source code |
| cell.cycle.genes.whitfield.2002 | Man page |
| cellCyclePlot | Man page Source code |
| clusterCenters | Man page Source code |
| clustering_evaluation_index | Source code |
| computeCC | Man page Source code |
| constrainScale | Man page Source code |
| convertGenesBetweenSpeciesHomologs | Man page |
| convertGenesBetweenSpeciesHomologs.character | Source code |
| convertGenesBetweenSpeciesHomologs.matrix | Source code |
| convertGenesBetweenSymbolsAndID | Man page Source code |
| correlateExpression | Man page Source code |
| cytobox | Man page |
| cytobox-package | Man page |
| dashboard | Man page Source code |
| decision_tree | Source code |
| drLims | Man page Source code |
| enexpr | Man page |
| enquo | Man page |
| ensembl2symbols | Man page Source code |
| ensym | Man page |
| expr | Man page |
| exprs | Man page |
| feature | Man page Source code |
| fetchData | Man page Source code |
| filterGenesSample | Man page Source code |
| findGenes | Man page Source code |
| geneName | Man page Source code |
| genelist_filter | Source code |
| get.Error | Source code |
| get.geneid | Source code |
| get.markers_type | Source code |
| get.markers_types | Source code |
| get.prediction | Source code |
| get.split_index | Source code |
| get.type | Source code |
| getAllMarkers | Man page Source code |
| getClusterColours | Man page Source code |
| getEntropy | Source code |
| getVarianceExplained | Man page Source code |
| ggColors | Man page |
| ggColours | Man page Source code |
| has.zero | Source code |
| heatmapPercentMarkerOverlap | Man page |
| hg2mm | Man page |
| hg2mm.character | Source code |
| hg2mm.matrix | Source code |
| highlight | Man page Source code |
| increase_sample_size | Source code |
| markerViolinPlot | Man page |
| maxEntropy | Source code |
| meanClusterExpression | Man page Source code |
| meanGeneExpression | Man page Source code |
| meanMarkerExpressionPerCell | Man page Source code |
| mm2hg | Man page |
| mm2hg.character | Source code |
| mm2hg.matrix | Source code |
| noLegend | Man page Source code |
| noTicks | Man page Source code |
| pairwiseVln | Man page Source code |
| pbmc | Man page |
| pca | Man page Source code |
| percentMarkerOverlap | Man page |
| percentilesMarkerExpression | Man page Source code |
| phate | Man page Source code |
| plot_dr | Man page Source code |
| plot_pca | Man page |
| plot_tsne | Man page |
| plot_umap | Man page |
| quo | Man page |
| quo_name | Man page |
| quos | Man page |
| rotateX | Man page Source code |
| row.predict | Source code |
| selectMarkersRF | Man page Source code |
| sym | Man page |
| symbols2ensembl | Man page Source code |
| syms | Man page |
| theme_min | Man page Source code |
| tidyeval | Man page |
| tree.predict | Source code |
| tsne | Man page Source code |
| tsneByMeanMarkerExpression | Man page Source code |
| tsneByPercentileMarkerExpression | Man page Source code |
| umap | Man page Source code |
| vln | Man page Source code |
| vlnGrid | Man page |
| whichCells | Man page Source code |
