clusterCenters: clusterCenters
In fungenomics/cytobox: A toolbox for analyzing single cell RNA-seq data
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/utils_plotting.R
Description
Get centers of clusters given a Seurat object, to use for labelling
in tSNE space. The cluster center is defined as the median X and Y coordinate
across cells in each cluster.
Usage
1
clusterCenters(seurat, reduction, dim1, dim2)
Arguments
seurat
Seurat object, where dimensionality reduction has been applied,
i.e. (after applying Seurat::RunTSNE() to the object).
Value
Data frame with three columns: Cluster, mean_tSNE_1, and mean_tSNE_2
Author(s)
Selin Jessa
Examples
1
clusterCenters(pbmc, reduction = "pca", dim1 = 1, dim2 = 3)
fungenomics/cytobox documentation built on Feb. 13, 2020, 10:51 a.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/utils_plotting.R
Description
Get centers of clusters given a Seurat object, to use for labelling in tSNE space. The cluster center is defined as the median X and Y coordinate across cells in each cluster.
Usage
1 | clusterCenters(seurat, reduction, dim1, dim2)
|
Arguments
seurat |
Seurat object, where dimensionality reduction has been applied, i.e. (after applying Seurat::RunTSNE() to the object). |
Value
Data frame with three columns: Cluster, mean_tSNE_1, and mean_tSNE_2
Author(s)
Selin Jessa
Examples
1 | clusterCenters(pbmc, reduction = "pca", dim1 = 1, dim2 = 3)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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