meanClusterExpression: meanClusterExpression
In fungenomics/cytobox: A toolbox for analyzing single cell RNA-seq data

This function computes the mean expression of each gene in each cluster

1	meanClusterExpression(seurat, genes = NULL)

`seurat`	Seurat object
`genes`	(Optional) Character vector specifying genes for which means should be calculated. If any provided genes are not detected, they are silently dropped. Default: all detected genes, i.e. `rownames(seurat@data)`.

A gene x cluster matrix, where each column contains the mean expression of each gene over all the cells in that cluster

Selin Jessa

1	meanClusterExpression(pbmc, c("IL32", "CD2"))

fungenomics/cytobox documentation built on Feb. 13, 2020, 10:51 a.m.

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