meanGeneExpression: meanGeneExpression
In fungenomics/cytobox: A toolbox for analyzing single cell RNA-seq data
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Calculate, for each cell, the mean expression of the given set of marker genes.
Usage
1
meanGeneExpression(seurat, genes)
Arguments
seurat
Seurat object
genes
String or character vector specifying gene(s) to use
Value
Data frame with two columns: "Cell" which specifies the cell ID
obtained from colnames(seurat@data), and "Mean_marker_expression"
which is the expression value for the marker gene, or mean if multiple
genes were provided.
Author(s)
Selin Jessa
Examples
1
meanGeneExpression(pbmc, genes = c("IL32", "MS4A1"))
fungenomics/cytobox documentation built on Feb. 13, 2020, 10:51 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Calculate, for each cell, the mean expression of the given set of marker genes.
Usage
1 | meanGeneExpression(seurat, genes)
|
Arguments
seurat |
Seurat object |
genes |
String or character vector specifying gene(s) to use |
Value
Data frame with two columns: "Cell" which specifies the cell ID
obtained from colnames(seurat@data), and "Mean_marker_expression"
which is the expression value for the marker gene, or mean if multiple
genes were provided.
Author(s)
Selin Jessa
Examples
1 | meanGeneExpression(pbmc, genes = c("IL32", "MS4A1"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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