Man pages for funkhou9/breedTools
Tools for use in breed composition prediction using genomic data
| allele_freq | Computes allele frequencies for specified populations given... |
| breed_lookup | Lookup haplotypes from a breed probability matrix |
| breedTools | Estimate breed composition of unknown animals using... |
| build_KBP | Build reference panel for KBP (KIT-based breed probability)... |
| build_local_reference | Build reference panel of breed probabilities |
| build_MBP | Build reference panel for MBP (MC1R-based breed probability)... |
| dist_plot | dist_plot |
| get_gsibs | Obtain relatives of id that share a grand mother or grand... |
| get_sibs | Obtain siblings of id, if any |
| haplo_comp | Compute haplotype frequencies and genotype probabilities |
| has_gsib | Detect if ID has a 'great sibling' in the pedigree, as... |
| has_progeny | Detect if each ID has progeny in pedigree and how many. |
| has_sib | Detect if ID has a full-sib or half-sib in the pedigree, as... |
| has_sire | Detect if each ID has a Father/Sire in pedigree |
| ped_build | Constructs pedigree information for select individuals |
| pick_unrelated | Pick unrelated ids from a pedigree |
| screen_purity | Calculate both GWBC and KBP for a test animal |
| sim_composition | Simulate hybrid animals for breed composition |
| sim_plot | Inspect the results of sim_composition() |
| solve_bp_generic | Solve generic breed probabilities |
| solve_composition | Compute genome-wide breed composition |
| solve_KBP | Solve KIT-Based Breed Probabilities (KBP) |
| solve_MBP | Solve MC1R-Based Breed Probabilities (MBP) |
