sim_composition: Simulate hybrid animals for breed composition
In funkhou9/breedTools: Tools for use in breed composition prediction using genomic data
Description
Use synthetic offspring to test the accuracy of breed/ancestry calculations among test population
Usage
1
sim_composition(Y, X, rep = 10000, par1, par2 = NULL)
Arguments
Y
numeric matrix of genotypes from all animals in population
X
numeric matrix of allele frequencies from reference animals
rep
integer indicating how many repititions of the simulation to perform
par1
list of IDs catagorized by breed/population to be used as "Parent 1" in a simulated
progeny test
par2
list of IDs catagorized by breed/population to be used as "Parent 2" in a simulated
progeny test. If null, two parents from sim1 will be chosen
funkhou9/breedTools documentation built on May 16, 2019, 4:04 p.m.
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Description
Use synthetic offspring to test the accuracy of breed/ancestry calculations among test population
Usage
1 | sim_composition(Y, X, rep = 10000, par1, par2 = NULL)
|
Arguments
Y |
numeric matrix of genotypes from all animals in population |
X |
numeric matrix of allele frequencies from reference animals |
rep |
integer indicating how many repititions of the simulation to perform |
par1 |
list of IDs catagorized by breed/population to be used as "Parent 1" in a simulated progeny test |
par2 |
list of IDs catagorized by breed/population to be used as "Parent 2" in a simulated progeny test. If null, two parents from sim1 will be chosen |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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