Files in funkhou9/breedTools
Tools for use in breed composition prediction using genomic data
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/QP_SimCross.R
R/QPseparate.R
R/QPsolve.R
R/QPsolve_par.R
R/allele_freq.R
R/breedTools.R
R/breed_lookup.R
R/build_KBP.R
R/build_MBP.R
R/build_local_reference.R
R/dist_plot.R
R/get_gsibs.R
R/get_sibs.R
R/haplo_comp.R
R/has_gsib.R
R/has_progeny.R
R/has_sib.R
R/has_sire.R
R/mat_allele.R
R/ped_build.R
R/pick_unrelated.R
R/screen_purity.R
R/sim_composition.R
R/sim_plot.R
R/solve_KBP.R
R/solve_MBP.R
R/solve_bp_generic.R
R/solve_composition.R
R/utils.R
README.md
breedTools.Rproj
data-raw/LowD_chip_maps.RData
data-raw/additional_ref_geno.RData
data-raw/reference_assemble.R
data-raw/trio_IDs.RData
data-raw/trio_gpData_fix.RData
data-raw/trio_ped_fimpute.txt
data/GWBC_ref_A.RData
data/GWBC_ref_B.RData
data/GWBC_ref_C.RData
data/KBP_ref_A.RData
data/KBP_ref_B.RData
data/KBP_ref_C.RData
data/KHAP_A.RData
data/KHAP_B.RData
data/KHAP_C.RData
data/MBP_ref_A.RData
data/MBP_ref_B.RData
data/MBP_ref_C.RData
data/MHAP_A.RData
data/MHAP_B.RData
data/MHAP_C.RData
man/allele_freq.Rd
man/breedTools.Rd
man/breed_lookup.Rd
man/build_KBP.Rd
man/build_MBP.Rd
man/build_local_reference.Rd
man/dist_plot.Rd
man/get_gsibs.Rd
man/get_sibs.Rd
man/haplo_comp.Rd
man/has_gsib.Rd
man/has_progeny.Rd
man/has_sib.Rd
man/has_sire.Rd
man/ped_build.Rd
man/pick_unrelated.Rd
man/screen_purity.Rd
man/sim_composition.Rd
man/sim_plot.Rd
man/solve_KBP.Rd
man/solve_MBP.Rd
man/solve_bp_generic.Rd
man/solve_composition.Rd
tests/testthat.R
tests/testthat/dat_for_allele_freqs.RData
tests/testthat/sample_genotypes.RData
tests/testthat/test_sim_composition.R
tests/testthat/test_solve_composition.R
