Description Usage Arguments Value
Given a breed probability matrix (provided by build_KBP()
or build_MBP()
), and a set of test animals'
genotypes, use this function to derive breed probabilities for each test animal genotype based on
a set of chosen SNPs
1 | solve_bp_generic(snps_, geno_, b_mat_, white_)
|
snps_ |
character vector containing names of SNPs to be extracted in geno, for use in breed probability estimation. |
geno_ |
a matrix or data.frame with genotypes of test animals. SNPs in columns and individuals in rows. Genotypes must be coded as dosage of allele 'b' 0, 1, 2. |
b_mat_ |
a data.frame that contains genotypes in rows and associated breed probabilities in columns. This is the output of build_KBP(), build_MBP(), etc. |
white_ |
a logical indicating whether "white" breeds (Yorkshire and Landrace, assuming present) should be grouped together into a white breed probability. |
a data.frame containing test animals in rows and breed probabilities in columns
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