allele_freq | Computes allele frequencies for specified populations given... |
breed_lookup | Lookup haplotypes from a breed probability matrix |
breedTools | Estimate breed composition of unknown animals using... |
build_KBP | Build reference panel for KBP (KIT-based breed probability)... |
build_local_reference | Build reference panel of breed probabilities |
build_MBP | Build reference panel for MBP (MC1R-based breed probability)... |
dist_plot | dist_plot |
get_gsibs | Obtain relatives of id that share a grand mother or grand... |
get_sibs | Obtain siblings of id, if any |
haplo_comp | Compute haplotype frequencies and genotype probabilities |
has_gsib | Detect if ID has a 'great sibling' in the pedigree, as... |
has_progeny | Detect if each ID has progeny in pedigree and how many. |
has_sib | Detect if ID has a full-sib or half-sib in the pedigree, as... |
has_sire | Detect if each ID has a Father/Sire in pedigree |
ped_build | Constructs pedigree information for select individuals |
pick_unrelated | Pick unrelated ids from a pedigree |
screen_purity | Calculate both GWBC and KBP for a test animal |
sim_composition | Simulate hybrid animals for breed composition |
sim_plot | Inspect the results of sim_composition() |
solve_bp_generic | Solve generic breed probabilities |
solve_composition | Compute genome-wide breed composition |
solve_KBP | Solve KIT-Based Breed Probabilities (KBP) |
solve_MBP | Solve MC1R-Based Breed Probabilities (MBP) |
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