allele_freq: Computes allele frequencies for specified populations given...
In funkhou9/breedTools: Tools for use in breed composition prediction using genomic data
Description
Usage
Arguments
Value
Description
Computes allele frequencies for specified populations given SNP array data
Usage
1
allele_freq(geno, populations)
Arguments
geno
matrix of genotypes coded as the dosage of allele B 0, 1, 2
with individuals in rows (named) and SNPs in columns (named)
populations
list of named populations. Each population has a vector of IDs
that belong to the population. Allele frequencies will be derived from all animals
Value
data.frame consisting of allele_frequencies for populations (columns) for
each SNP (rows)
funkhou9/breedTools documentation built on May 16, 2019, 4:04 p.m.
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Description Usage Arguments Value
Description
Computes allele frequencies for specified populations given SNP array data
Usage
1 | allele_freq(geno, populations)
|
Arguments
geno |
matrix of genotypes coded as the dosage of allele B 0, 1, 2 with individuals in rows (named) and SNPs in columns (named) |
populations |
list of named populations. Each population has a vector of IDs that belong to the population. Allele frequencies will be derived from all animals |
Value
data.frame consisting of allele_frequencies for populations (columns) for each SNP (rows)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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