breed_lookup: Lookup haplotypes from a breed probability matrix
In funkhou9/breedTools: Tools for use in breed composition prediction using genomic data
Description
Usage
Arguments
Value
Description
Breed probability matrices can be constructed with the help of haplo_comp(), they contain
genotypes for a region in rows and probabilities that that genotype belongs to a breed / breed hybrid
in the columns.
Usage
1
breed_lookup(geno, bmat, white_freq = FALSE)
Arguments
geno
string containing genotypes for a region represented as (ex. 2011210?1211?)
bmat
a breed probability matrix as described from above
white_freq
logical. If true, combines breed probabilities of Yorkshire and Landrace breeds
when those are present.
Value
probabilities of being particular breeds based on stretch of genotype information provided
in geno argument.
funkhou9/breedTools documentation built on May 16, 2019, 4:04 p.m.
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Description Usage Arguments Value
Description
Breed probability matrices can be constructed with the help of haplo_comp(), they contain genotypes for a region in rows and probabilities that that genotype belongs to a breed / breed hybrid in the columns.
Usage
1 | breed_lookup(geno, bmat, white_freq = FALSE)
|
Arguments
geno |
string containing genotypes for a region represented as (ex. 2011210?1211?) |
bmat |
a breed probability matrix as described from above |
white_freq |
logical. If true, combines breed probabilities of Yorkshire and Landrace breeds when those are present. |
Value
probabilities of being particular breeds based on stretch of genotype information provided in geno argument.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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