run_digest: Create digest of QTL analysis results.

Description Usage Arguments See Also

View source: R/run_digest.R

Description

Given one or more scan result HDF5 files, create a digest of the results of the QTL analyses. Results can be output for specific phenotypes, analyses, and worksheets. These output constraints are applied with parameters pheno, scans, and sheets, respectively.

Usage

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run_digest(h5list = character(), digest = NA_character_,
  pheno = character(), scans = character(), sheets = character(),
  scanfile.pattern = NA_character_)

Arguments

h5list

list of HDF5 scan files [required]

digest

scan digest file [required]

pheno

phenotypes to output [default: all]

scans

analyses to output [default: all]

sheets

worksheets to output

scanfile.pattern

scan file name pattern

See Also

Other pipeline functions: run_annoqtl, run_estimap, run_interptimes, run_makecross, run_makegeno, run_prep, run_pullmap, run_pushmap, run_recode, run_report, run_scanone, run_scantwo


gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.