run_report: Create report of QTL analysis results.

In gact/shmootl: QTL Analysis Utilities for Yeast

Description

Given a scan result HDF5 file, create a report of the results of the QTL analysis. Results can be output for specific phenotypes, analyses, and, in the case of Excel output, worksheets. These output constraints are applied with parameters pheno, scans, and sheets, respectively.

Usage

run_report(h5file = NA_character_, report = NA_character_,
  pheno = character(), scans = character(), sheets = character(),
  scanfile.pattern = NA_character_)

Arguments

h5file	HDF5 scan file [required]
report	scan report file [required]
pheno	phenotypes to output [default: all]
scans	analyses to output [default: all]
sheets	worksheets to output (Excel only)
scanfile.pattern	scan file name pattern (Excel only)

See Also

Other pipeline functions: run_annoqtl, run_digest, run_estimap, run_interptimes, run_makecross, run_makegeno, run_prep, run_pullmap, run_pushmap, run_recode, run_scanone, run_scantwo

gact/shmootl documentation built on Nov. 11, 2021, 6:23 p.m.