Man pages for gagneurlab/OUTRIDER
OUTRIDER - OUTlier in RNA-Seq fInDER

aberrantNumber of aberrant events
computeGeneLengthExtracting the gene length from annotations
computeLatentSpaceExtracting the latent space
computePvaluesCalculate P-values
computeZscoresZ score computation
controlForConfoundersAutoencoder function to correct for confounders.
countsAccessors for the 'counts' slot of an OutriderDataSet object.
estimateBestQFind the optimal encoding dimension
filterExpressionFilter expression
fitFit the negative binomial distribution
fpkmCalculate FPM and FPKM values
getter_setter_functionsGetter/Setter functions
makeExampleOutriderDataSetCreate example data sets for OUTRIDER
normalizationFactorsAccessor functions for the normalization factors in an...
OUTRIDEROUTRIDER - Finding expression outlier events
OutriderDataSet-classOutriderDataSet class and constructors
plotFunctionsVisualization functions for OUTRIDER
resultsAccessor function for the 'results' object in an...
sampleExclusionMaskSample exclusion
sizeFactorsSizeFactors accessor and estimation function
gagneurlab/OUTRIDER documentation built on June 13, 2025, 9:43 a.m.