Man pages for gagneurlab/OUTRIDER
OUTRIDER - OUTlier in RNA-Seq fInDER
| aberrant | Number of aberrant events |
| computeGeneLength | Extracting the gene length from annotations |
| computeLatentSpace | Extracting the latent space |
| computePvalues | Calculate P-values |
| computeZscores | Z score computation |
| controlForConfounders | Autoencoder function to correct for confounders. |
| counts | Accessors for the 'counts' slot of an OutriderDataSet object. |
| estimateBestQ | Estimation of Q |
| filterExpression | Filter expression |
| findEncodingDim | Find the optimal encoding dimension |
| fit | Fit the negative binomial distribution |
| fpkm | Calculate FPM and FPKM values |
| getter_setter_functions | Getter/Setter functions |
| makeExampleOutriderDataSet | Create example data sets for OUTRIDER |
| normalizationFactors | Accessor functions for the normalization factors in an... |
| OUTRIDER | OUTRIDER - Finding expression outlier events |
| OutriderDataSet-class | OutriderDataSet class and constructors |
| plotFunctions | Visualization functions for OUTRIDER |
| results | Accessor function for the 'results' object in an... |
| sampleExclusionMask | Sample exclusion |
| sizeFactors | SizeFactors accessor and estimation function |
