aaindex1: List of 571 Amino Acid Physicochemical Indexes from AAindex...
In genomaths/GenomAutomorphism: Compute the automorphisms between DNA's Abelian group representations
aaindex1 R Documentation
List of 571 Amino Acid Physicochemical Indexes from AAindex Database
Description
The aminoacid indexes from Amino Acid Index Database
https://www.genome.jp/aaindex/ are provided here. AAindex (ver.9.2)
is a database of numerical indices representing various physicochemical and
biochemical properties of amino acids and pairs of amino acids.
Usage
data("aaindex1", package = "GenomAutomorphism")
Format
A list carrying the the description 566 Amino Acid Indices in
AAindex ver.9.2 and the text file with the matrices imported from
https://www.genome.jp/aaindex/.
Author(s)
Robersy Sanchez https://genomaths.com
See Also
aaindex2 and aaindex3.
Examples
## Load the mutation matrices from database from the packages
data("aaindex1", package = "GenomAutomorphism", envir = environment())
## Get the available aminoacid indices.
mat <- aa_phychem_index(aaindex = "aaindex1", acc_list = TRUE)
mat[1:10]
genomaths/GenomAutomorphism documentation built on May 10, 2024, 12:11 a.m.
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| aaindex1 | R Documentation |
List of 571 Amino Acid Physicochemical Indexes from AAindex Database
Description
The aminoacid indexes from Amino Acid Index Database https://www.genome.jp/aaindex/ are provided here. AAindex (ver.9.2) is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids.
Usage
data("aaindex1", package = "GenomAutomorphism")
Format
A list carrying the the description 566 Amino Acid Indices in AAindex ver.9.2 and the text file with the matrices imported from https://www.genome.jp/aaindex/.
Author(s)
Robersy Sanchez https://genomaths.com
See Also
aaindex2 and aaindex3.
Examples
## Load the mutation matrices from database from the packages
data("aaindex1", package = "GenomAutomorphism", envir = environment())
## Get the available aminoacid indices.
mat <- aa_phychem_index(aaindex = "aaindex1", acc_list = TRUE)
mat[1:10]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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