autm: Automorphisms between DNA Sequences from two COVID-19 genomes
In genomaths/GenomAutomorphism: Compute the automorphisms between DNA's Abelian group representations
autm R Documentation
Automorphisms between DNA Sequences from two COVID-19 genomes
Description
This is a AutomorphismList object carrying a list of pairwise
automorphisms between the SARS coronavirus GZ02 (GenBank: AY390556.1:
265-13398_13398-21485) and Bat SARS-like coronavirus isolate bat-SL-CoVZC45
(GenBank: MG772933.1:265-1345513455-21542), nonstructural_polyprotein. The
pairwise DNA sequence alignment is available in the dataset named
covid_aln and the automorphisms were estimated with function
autZ64.
Usage
data("autm", package = "GenomAutomorphism")
Format
AutomorphismList class object.
Details
The alignment of these DNA sequences is available at:
https://github.com/genomaths/seqalignments/raw/master/COVID-19 in
the fasta file
'AY390556.1_265-13398_13398-21485_RNA-POL_SARS_COVI_GZ02.fas'
Examples
data("autm", package = "GenomAutomorphism")
autm
genomaths/GenomAutomorphism documentation built on Dec. 12, 2024, 2:12 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| autm | R Documentation |
Automorphisms between DNA Sequences from two COVID-19 genomes
Description
This is a AutomorphismList object carrying a list of pairwise automorphisms between the SARS coronavirus GZ02 (GenBank: AY390556.1: 265-13398_13398-21485) and Bat SARS-like coronavirus isolate bat-SL-CoVZC45 (GenBank: MG772933.1:265-1345513455-21542), nonstructural_polyprotein. The pairwise DNA sequence alignment is available in the dataset named covid_aln and the automorphisms were estimated with function autZ64.
Usage
data("autm", package = "GenomAutomorphism")
Format
AutomorphismList class object.
Details
The alignment of these DNA sequences is available at: https://github.com/genomaths/seqalignments/raw/master/COVID-19 in the fasta file 'AY390556.1_265-13398_13398-21485_RNA-POL_SARS_COVI_GZ02.fas'
Examples
data("autm", package = "GenomAutomorphism")
autm
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.