autm: Automorphisms between DNA Sequences from two COVID-19 genomes

autmR Documentation

Automorphisms between DNA Sequences from two COVID-19 genomes

Description

This is a AutomorphismList object carrying a list of pairwise automorphisms between the SARS coronavirus GZ02 (GenBank: AY390556.1: 265-13398_13398-21485) and Bat SARS-like coronavirus isolate bat-SL-CoVZC45 (GenBank: MG772933.1:265-1345513455-21542), nonstructural_polyprotein. The pairwise DNA sequence alignment is available in the dataset named covid_aln and the automorphisms were estimated with function autZ64.

Usage

data("autm", package = "GenomAutomorphism")

Format

AutomorphismList class object.

Details

The alignment of these DNA sequences is available at: https://github.com/genomaths/seqalignments/raw/master/COVID-19 in the fasta file 'AY390556.1_265-13398_13398-21485_RNA-POL_SARS_COVI_GZ02.fas'

Examples

data("autm", package = "GenomAutomorphism")
autm


genomaths/GenomAutomorphism documentation built on May 10, 2024, 12:11 a.m.