brca1_autm2: Automorphisms between DNA Sequences from Primate BRCA1 Genes

brca1_autm2R Documentation

Automorphisms between DNA Sequences from Primate BRCA1 Genes

Description

This is a AutomorphismList object carrying a list of pairwise automorphisms between the DNA sequences from the MSA of primate BRCA1 DNA repair gene. The data set brca1_aln2 has 41 DNA sequences and it contains the previous 20 primate variants found in 'braca1_aln' data set plus 21 single mutation variants (SMV) from the human sequence NM_007298 transcript variant 4. The location of each SMV is given in the heading from each sequence. The automorphisms were estimated from the brca1_aln MSA with function autZ64.

Usage

data("brca1_autm2", package = "GenomAutomorphism")

Format

AutomorphismList class object.


genomaths/GenomAutomorphism documentation built on May 10, 2024, 12:11 a.m.