Files in genomaths/GenomAutomorphism
Compute the automorphisms between DNA's Abelian group representations
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/GenomAutomorphism.R
R/aa_phychem_index.R
R/allClasses.R
R/aminoacid_dist.R
R/as.AutomorphismList.R
R/aut3D.R
R/autZ125.R
R/autZ5.R
R/autZ64.R
R/automorphismByRanges.R
R/automorphism_bycoef.R
R/automorphisms.R
R/base2codon.R
R/base2int.R
R/base_methods.R
R/codon_coord.R
R/codon_dist.R
R/codon_dist_matrix.R
R/codon_matrix.R
R/conserved_regions.R
R/data_aaindex1.R
R/data_aaindex2.R
R/data_aaindex3.R
R/data_aln.R
R/data_autby_coef.R
R/data_autm.R
R/data_autm_3d.R
R/data_autm_z125.R
R/data_brca1_aln.R
R/data_brca1_aln2.R
R/data_brca1_autm.R
R/data_brca1_autm2.R
R/data_cdm_z64.R
R/data_covid_aln.R
R/data_covid_autm.R
R/data_cyc_aln.R
R/data_cyc_autm.R
R/data_dna_phyche.R
R/dna_phychem.R
R/extract-methods.R
R/getAutomorphisms.R
R/get_coord.R
R/get_mutscore.R
R/matrices.R
R/mod.R
R/modeq.R
R/modlineq.R
R/mut_type.R
R/peptide_phychem_index.R
R/reexport.R
R/seqranges.R
R/show-methods.R
R/slapply.R
R/sortByChromAndStart.R
R/str2chr.R
R/str2dig.R
R/translation.R
README.md
data/aaindex1.rda
data/aaindex2.rda
data/aaindex3.rda
data/aln.rda
data/autby_coef.rda
data/autm.rda
data/autm_3d.rda
data/autm_z125.rda
data/brca1_aln.rda
data/brca1_aln2.rda
data/brca1_autm.rda
data/brca1_autm2.rda
data/cdm_z64.rda
data/covid_aln.rda
data/covid_autm.rda
data/cyc_aln.rda
data/cyc_autm.rda
data/dna_phyche.rda
inst/scripts/datasets_script.R
man/Automorphism.Rd
man/AutomorphismByCoef.Rd
man/AutomorphismByCoefList.Rd
man/AutomorphismList.Rd
man/BaseGroup.Rd
man/BaseGroup_OR_CodonGroup.Rd
man/BaseSeq.Rd
man/BaseSeqMatrix.Rd
man/CodonGroup.Rd
man/CodonMatrix.Rd
man/CodonSeq.Rd
man/ConservedRegion.Rd
man/GRangesMatrixSeq.Rd
man/GRanges_OR_NULL.Rd
man/GenomAutomorphism.Rd
man/ListCodonMatrix.Rd
man/MatrixList.Rd
man/MatrixSeq.Rd
man/aa_phychem_index.Rd
man/aaindex1.Rd
man/aaindex2.Rd
man/aaindex3.Rd
man/aln.Rd
man/aminoacid_dist.Rd
man/as.AutomorphismList.Rd
man/aut3D.Rd
man/autZ125.Rd
man/autZ5.Rd
man/autZ64.Rd
man/autby_coef.Rd
man/autm.Rd
man/autm_3d.Rd
man/autm_z125.Rd
man/automorphismByRanges.Rd
man/automorphism_bycoef.Rd
man/automorphisms.Rd
man/base2codon.Rd
man/base2int.Rd
man/base_methods.Rd
man/base_repl.Rd
man/brca1_aln.Rd
man/brca1_aln2.Rd
man/brca1_autm.Rd
man/brca1_autm2.Rd
man/cdm_z64.Rd
man/codon_coord.Rd
man/codon_dist.Rd
man/codon_dist_matrix.Rd
man/codon_matrix.Rd
man/conserved_regions.Rd
man/covid_aln.Rd
man/covid_autm.Rd
man/cyc_aln.Rd
man/cyc_autm.Rd
man/dna_phyche.Rd
man/dna_phychem.Rd
man/extract-methods.Rd
man/figures/logo.png
man/getAutomorphisms.Rd
man/get_coord.Rd
man/get_mutscore.Rd
man/is.url.Rd
man/matrices.Rd
man/mod.Rd
man/modeq.Rd
man/modlineq.Rd
man/mut_type.Rd
man/peptide_phychem_index.Rd
man/reexports.Rd
man/seqranges.Rd
man/show-methods.Rd
man/slapply.Rd
man/sortByChromAndStart.Rd
man/str2chr.Rd
man/str2dig.Rd
man/translation.Rd
man/valid.Automorphism.Rd
man/valid.AutomorphismByCoef.Rd
man/valid.AutomorphismByCoefList.Rd
man/valid.AutomorphismList.Rd
man/valid.BaseGroup.Rd
man/valid.CodonGroup.Rd
man/valid.MatrixList.Rd
tests/spelling.R
tests/testthat.R
tests/testthat/test-AutomorphismList-methods.R
tests/testthat/test-aa_mutmat.R
tests/testthat/test-aa_phychem_index.R
tests/testthat/test-aminoacid_dist.R
tests/testthat/test-as.AutomorphismList.R
tests/testthat/test-aut3D.R
tests/testthat/test-autZ125.R
tests/testthat/test-autZ5.R
tests/testthat/test-autZ64.R
tests/testthat/test-automorphismByRanges.R
tests/testthat/test-automorphism_bycoef.R
tests/testthat/test-automorphisms.R
tests/testthat/test-base2codon.R
tests/testthat/test-base2int.R
tests/testthat/test-base_coord.R
tests/testthat/test-codon_dist.R
tests/testthat/test-codon_dist_matrix.R
tests/testthat/test-conserved_regions.R
tests/testthat/test-extract-methods.R
tests/testthat/test-getAutomorphisms.R
tests/testthat/test-get_coord.R
tests/testthat/test-get_mutscore.R
tests/testthat/test-matrices.R
tests/testthat/test-mod.R
tests/testthat/test-modeq.R
tests/testthat/test-modlineq.R
tests/testthat/test-mut_type.R
tests/testthat/test-peptide_phychem_index.R
tests/testthat/test-seqranges.R
tests/testthat/test-slapply.R
tests/testthat/test-str2chr.R
tests/testthat/test-str2dig.R
tests/testthat/test-translation.R
vignettes/.gitignore
vignettes/GenomAutomorphism.Rmd
